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    <title>Protein-Folding on Pi Stack</title>
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      <title>Self-Hosted Protein Structure Prediction: OpenFold vs ColabFold vs ESMFold</title>
      <link>https://www.pistack.xyz/posts/2026-06-13-self-hosted-protein-structure-prediction-openfold-colabfold-esmfold/</link>
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      <description>&lt;h2 id=&#34;introduction&#34;&gt;Introduction&lt;/h2&gt;&#xA;&lt;p&gt;Predicting a protein&amp;rsquo;s three-dimensional structure from its amino acid sequence has been one of biology&amp;rsquo;s grand challenges for over 50 years. The breakthrough of AlphaFold2 in 2020 fundamentally changed the field, achieving near-experimental accuracy in the CASP14 competition. Since then, a vibrant ecosystem of open-source alternatives has emerged, making protein structure prediction accessible to research labs without access to AlphaFold&amp;rsquo;s proprietary infrastructure.&lt;/p&gt;</description>
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