https://www.pistack.xyz/tags/protein-docking/ Recent content in Protein-Docking on Pi Stack Hugo en-us Sat, 13 Jun 2026 00:00:00 +0000 https://www.pistack.xyz/posts/2026-06-13-self-hosted-protein-protein-docking-autodock-vina-lightdock-autodock-gpu/ Sat, 13 Jun 2026 00:00:00 +0000 https://www.pistack.xyz/posts/2026-06-13-self-hosted-protein-protein-docking-autodock-vina-lightdock-autodock-gpu/ <h2 id="introduction">Introduction</h2> <p>Protein-protein docking — predicting how two protein structures bind together — is one of the most computationally demanding tasks in structural biology. It underpins antibody design, drug target identification, enzyme engineering, and understanding signal transduction pathways. While the field was once dominated by proprietary academic codes running on institutional HPC clusters, open-source docking engines now bring these capabilities to any lab with a server or GPU workstation.</p>