https://www.pistack.xyz/tags/metagenomics/ Recent content in Metagenomics on Pi Stack Hugo en-us Sat, 13 Jun 2026 00:00:00 +0000 https://www.pistack.xyz/posts/2026-06-13-self-hosted-microbiome-analysis-phyloseq-metaphlan-humann/ Sat, 13 Jun 2026 00:00:00 +0000 https://www.pistack.xyz/posts/2026-06-13-self-hosted-microbiome-analysis-phyloseq-metaphlan-humann/ <h2 id="introduction">Introduction</h2> <p>Understanding the composition and function of microbial communities is a cornerstone of modern biological research. From gut health studies to environmental monitoring, microbiome analysis requires specialized computational tools that can handle the complexity of sequencing data. While cloud-based platforms offer convenience, self-hosting these analysis pipelines gives researchers full control over their data, reproducible workflows, and freedom from subscription costs.</p> https://www.pistack.xyz/posts/2026-06-10-self-hosted-metagenomics-analysis-qiime2-kraken2-mothur/ Wed, 10 Jun 2026 00:00:00 +0000 https://www.pistack.xyz/posts/2026-06-10-self-hosted-metagenomics-analysis-qiime2-kraken2-mothur/ <p>The human microbiome — the collection of bacteria, archaea, fungi, and viruses living in and on our bodies — contains roughly as many cells as our own human cells and encodes 100 times more genes than the human genome. Understanding these microbial communities has profound implications for health, agriculture, and environmental science.</p>